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MLKi8_01890 Locus tags: • Sequence Length: 429

Methanospirillum stamsii, Pt1 Batch4_genome_fasta/bc2029

5050100100150150200200250250300300350350400400450450
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MLKi8_01886 MLKi8_01887 MLKi8_01889 MLKi8_01890 MLKi8_01891 MLKi8_01894 
    [PF00374]_[PF00498]_[PF00346]

    [45:PF00374]_[89:PF00498]_[121:PF00346]

    [16:IPR029014]_[45:IPR001501]_[77:IPR000253]_[79:IPR008984]_[87:IPR000253]_[88:IPR000253]_[89:IPR000253]_[121:IPR001135]

Looking for similar signatures in the working genomes

PF00374:NiFeSe_Hases. Nickel-dependent hydrogenase

Found 93 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514863.1:LOMAGDGF_0059142-112
Clostridium acetobutylicum, DSM 1731 WP_010890826.1:FHOCHPCF_0394238-119
125-323
329-456
Acetivibrio alkalicellulosi, DSM 17461 2510059989:NJMEOJLD_0025138-118
128-455
Pseudobacteroides cellulosolvens, DSM 2933 WP_036937425.1:NEIHKHHH_0429038-118
128-333
342-469
WP_036935085.1:NEIHKHHH_0501541-111
Clostridium acetobutylicum, ATCC 824 WP_010890826.1:OJAMHIDJ_0395538-119
125-323
329-456
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698906.1:PROKKA_0362441-111
FD_25_22, AnGL7 AnGL7_0125951-129
285-462
FD_YE_25_21, AnGL21 AnGL21_0359742-128
267-422
AnGL21_0019938-551
Syntrophus buswellii, Sbus Sbus_0229340-119
235-453
Syntrophomonas curvata, Scurva Scurva_0184637-123
127-474
Syntrophomonas wolfei methylbutyratica, Swm Swm_0122838-63
Swm_012296-355
Terrisporobacter hibernicus, AnGL54 AnGL54_0127237-123
132-323
329-457
FD-25-21, AnGL21 AnGL21_0130551-129
286-462
Variovorax paradoxus, 2u118 PaGL#32_0564837-119
242-485
PaGL#32_0566852-603
Maridesulfovibrio salexigens, AnGL23 AnGL23_0125750-129
134-487
AnGL23_0139058-554
AnGL23_0388041-110
Clostridium subterminale, CB-LS10-1 AnGL53_0223837-130
132-323
330-457
Variovorax paradoxus, SPNA7 PaGL#43_0563837-116
242-485
PaGL#43_0565852-603
Methanospirillum lacunae, Ki8-1 MLKi8_0049740-109
361-438
MLKi8_00893193-257
MLKi8_0342642-111
Methanospirillum hungatei, GP1 MhGP1_0016242-111
MhGP1_0054444-112
MhGP1_0071840-109
327-438
MhGP1_0154245-114
Methanospirillum stamsii, Pt1 MLKi8_0046942-111
MLKi8_0077744-112
MLKi8_0097040-109
339-438
MLKi8_0189045-114
Syntrophomonas wolfei, saponavida Swsap_0269638-118
124-467
Micromonospora inositola, Utrum1 PaGL#61_0378755-137
177-577
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_0200037-123
132-323
329-457
Methanospirillum.hungatei GP1, MhGP1 8064048018:MhGP1_0136045-114
MhGP1_0218440-109
327-438
8064049036:MhGP1_0235844-112
8064049426:MhGP1_0274042-111
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11128:Mhun_0012945-114
Ga0065338_112714:Mhun_0271042-111
Ga0065338_113085:Mhun_0308444-112
Mhun_0332240-109
339-438
MPOB, Sfum 639702560:Sfum_0184039-118
340-420
639702987:Sfum_0228539-118
357-457
639703487:Sfum_0279239-117
267-454
639703724:Sfum_0303238-531
639704308:Sfum_0362058-137
357-444
639704727:Sfum_0404639-118
333-449
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_11352:Szehn_0089938-63
Szehn_009001-42
47-389
Syntrophus aciditrophicus, SB 637858427:SYN_0011442-125
256-433
Syntrophus gentianae, DSM8423 Ga0074853_11649:Sgen_0213539-542
Ga0074853_10641:Sgen_0103540-118
244-453

PF00498:FHA. FHA domain

Found 82 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003516895.1:LOMAGDGF_0061671-138
WP_003517043.1:LOMAGDGF_00955444-510
WP_003516581.1:LOMAGDGF_0163727-78
123-187
Clostridium acetobutylicum, DSM 1731 WP_010963365.1:FHOCHPCF_00045392-458
WP_010963368.1:FHOCHPCF_00048130-194
WP_010963728.1:FHOCHPCF_00450440-506
WP_010963730.1:FHOCHPCF_00452115-177
WP_010963826.1:FHOCHPCF_0054986-151
Acetivibrio alkalicellulosi, DSM 17461 2510062244:NJMEOJLD_02444409-475
2510062810:NJMEOJLD_0300389-156
2510063289:NJMEOJLD_0347687-154
2510063290:NJMEOJLD_03477145-220
Pseudobacteroides cellulosolvens, DSM 2933 WP_036946226.1:NEIHKHHH_00333450-516
WP_036941805.1:NEIHKHHH_02335165-231
WP_036944559.1:NEIHKHHH_0281828-87
123-187
WP_050753464.1:NEIHKHHH_02939210-275
WP_036943640.1:NEIHKHHH_0533271-137
WP_036940127.1:NEIHKHHH_05809284-350
WP_050753959.1:NEIHKHHH_05824120-197
WP_036940159.1:NEIHKHHH_0582583-150
Paenibacillus guangzhouensis, KCTC 33171 WP_193726546.1:KDFAKKPF_03847464-530
Clostridium acetobutylicum, ATCC 824 WP_010963365.1:OJAMHIDJ_00045392-458
WP_010963368.1:OJAMHIDJ_00048130-194
WP_010963728.1:OJAMHIDJ_00451440-506
WP_010963730.1:OJAMHIDJ_00453115-177
WP_010963826.1:OJAMHIDJ_0055086-151
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698187.1:PROKKA_0086875-138
WP_137697946.1:PROKKA_02414455-521
FD_SO4_25_1_F22, AnGL30 AnGL30_0222893-169
FD_YE_25_21, AnGL21 AnGL21_04379413-471
526-592
AnGL21_04383121-193
Syntrophus buswellii, Sbus Sbus_0004622-86
Sbus_0142723-86
FD-MS-7-8, AnGL9 AnGL9_0009922-86
Variovorax sp., EBFNA2 PaGL#33_0026326-95
PaGL#33_0058427-94
PaGL#33_02909192-237
PaGL#33_0595822-86
Variovorax paradoxus, 2u118 PaGL#32_0023026-95
PaGL#32_0058227-93
PaGL#32_02580213-258
PaGL#32_0516822-87
Dietzia cinnamea, 55 PaGL#56_00041219-281
PaGL#56_0142469-132
Clostridium subterminale, CB-LS10-1 AnGL53_0314471-135
Priestia megaterium, 10L1 PaGL#57_0441326-95
Variovorax paradoxus, SPNA7 PaGL#43_0022526-95
PaGL#43_0055727-93
PaGL#43_02834213-258
PaGL#43_0538322-87
Methanospirillum lacunae, Ki8-1 MLKi8_00276193-271
MLKi8_0189089-154
MLKi8_02141162-241
Geodermatophilus sp., RDM14 PaGL#36_00156195-258
PaGL#36_0227491-154
PaGL#36_03371227-310
Fictibacillus phosphorivorans, TY7 PaGL#38_0399431-98
Methanospirillum hungatei, GP1 MhGP1_01930189-241
MhGP1_02358165-241
MhGP1_0310289-155
Methanospirillum stamsii, Pt1 MLKi8_00030183-241
MLKi8_00287104-170
MLKi8_01791168-245
Peribacillus frigoritolerans, 30N-5 PaGL#67_0129730-98
Micromonospora inositola, Utrum1 PaGL#61_0047224-88
PaGL#61_0392368-131
PaGL#61_0601030-94
Methanospirillum.hungatei GP1, MhGP1 8064047185:MhGP1_00545165-241
8064047619:MhGP1_00973189-241
8064049735:MhGP1_0304489-155
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11211:Mhun_00209185-248
Ga0065338_111169:Mhun_01169169-247
Ga0065338_112453:Mhun_0245189-155
MPOB, Sfum 639701315:Sfum_0057521-86
639703307:Sfum_0261621-86
639704206:Sfum_0351824-87
Syntrophus gentianae, DSM8423 Sgen_0166123-86
Ga0074853_13113:Sgen_0288222-86
Ruminococcus callidus, ATCC 27760 Rcal_0113674-138

PF00346:Complex1_49kDa. Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Found 80 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003514863.1:LOMAGDGF_00591118-282
286-359
Pseudobacteroides cellulosolvens, DSM 2933 WP_036935085.1:NEIHKHHH_05015118-281
285-358
WP_036943340.1:NEIHKHHH_05118297-449
455-523
Paenibacillus guangzhouensis, KCTC 33171 WP_152396328.1:KDFAKKPF_05497119-293
291-365
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137696069.1:PROKKA_01974298-451
459-526
WP_137698906.1:PROKKA_03624118-280
285-359
Syntrophomonas erecta, DSM 16215 OINOEOOJ_00358118-294
295-365
Syntrophomonas curvata, Scurva Scurva_01534122-297
299-369
Syntrophomonas erecta sporosyntropha, Sespor Sespor_00647118-294
295-365
Methylobacterium radiotolerans, GTSA1 PaGL#34_02276121-396
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_02819141-400
PaGL#35_06387129-402
Syntrophomonas erecta, GB-438 Ga0610585_00358118-294
295-365
Variovorax sp., EBFNA2 PaGL#33_04109119-417
Variovorax paradoxus, 2u118 PaGL#32_03610119-417
Dietzia cinnamea, 55 PaGL#56_00389155-441
Maridesulfovibrio salexigens, AnGL23 AnGL23_01744135-303
307-383
AnGL23_03880118-281
285-358
Variovorax paradoxus, SPNA7 PaGL#43_03649119-417
Methanospirillum lacunae, Ki8-1 MLKi8_00040286-438
MLKi8_00893266-509
MLKi8_03426119-283
286-359
Geodermatophilus sp., RDM14 PaGL#36_03836162-448
Methylorubrum populi, CTY4 PaGL#39_00901121-396
Fictibacillus phosphorivorans, TY7 PaGL#38_04563119-365
Methanospirillum hungatei, GP1 MhGP1_00162119-282
286-359
MhGP1_00232283-439
MhGP1_00544123-281
285-361
MhGP1_01542121-378
Methanospirillum stamsii, Pt1 MLKi8_00469119-282
286-359
MLKi8_00533276-442
MLKi8_00777123-281
286-361
MLKi8_01890121-378
Syntrophomonas wolfei, saponavida Swsap_01795119-295
296-366
Peribacillus frigoritolerans, 30N-5 PaGL#67_00465119-290
290-364
Micromonospora inositola, Utrum1 PaGL#61_00576155-441
PaGL#61_06786142-315
314-389
Sphingomonas sp., CR2A3 PaGL#62_00813137-409
Methanospirillum.hungatei GP1, MhGP1 8064048018:MhGP1_01360121-378
8064049036:MhGP1_02358123-281
285-361
8064049357:MhGP1_02670283-439
8064049426:MhGP1_02740119-282
286-359
Methanospirillum.hungatei.JF-1, MhunJF1 Ga0065338_11128:Mhun_00129121-378
Ga0065338_112714:Mhun_02710118-282
286-359
Ga0065338_112789:Mhun_02785278-445
443-518
Ga0065338_113085:Mhun_03084123-281
285-361
MPOB, Sfum 639700956:Sfum_00215126-295
297-373
639702710:Sfum_01998524-795
Syntrophomonas zehnderi, OL-4 Szehn Szehn_00918119-294
295-366
Syntrophus gentianae, DSM8423 Ga0074853_12418:Sgen_02597133-298
299-379
Mucilaginibacter gossypii, cycad 4 PaGL#42_02468141-400
PaGL#42_03466129-402
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