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PaGL#56_02585 Locus tags: • Sequence Length: 557

Dietzia cinnamea, 55 Batch3_genome_fasta/D.cinnamea

5050100100150150200200250250300300350350400400450450500500550550600600
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PaGL#56_02581 PaGL#56_02582 PaGL#56_02585 PaGL#56_02587 
    [SP]_[PF13306]_[PF09479]_[TM]

    [SP]_[89:PF13306]_[357:PF09479]_[TM]

    [SP]_[89:IPR026906]_[357:IPR013378]_[TM]

Looking for similar signatures in the working genomes

PF13306:LRR_5. BspA type Leucine rich repeat region (6 copies)

Found 241 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003522420.1:LOMAGDGF_02644205-325
340-455
556-701
Acetivibrio alkalicellulosi, DSM 17461 2510063222:NJMEOJLD_0340972-195
309-421
502-614
653-734
Pseudobacteroides cellulosolvens, DSM 2933 WP_050753076.1:NEIHKHHH_00839151-277
WP_036940816.1:NEIHKHHH_00932152-279
354-418
519-607
748-814
984-1085
WP_036944238.1:NEIHKHHH_0125229-143
209-289
436-563
590-703
748-858
1003-1044
1072-1123
1226-1339
WP_036945090.1:NEIHKHHH_0129160-117
128-170
WP_036937940.1:NEIHKHHH_01836218-327
334-417
529-633
WP_036944865.1:NEIHKHHH_04508140-243
378-493
712-839
WP_050753754.1:NEIHKHHH_0476890-148
175-228
256-308
338-387
814-900
926-990
1007-1063
1092-1156
WP_036943386.1:NEIHKHHH_0514191-158
182-234
278-334
343-391
WP_050753876.1:NEIHKHHH_0544481-163
184-276
WP_036945214.1:NEIHKHHH_05473329-457
745-872
Ruminococcus albus_7, DSM 20455 WP_028504174.1:HCIAFFOI_03282106-234
WP_013483349.1:HCIAFFOI_0343970-170
174-228
241-306
356-442
WP_013483369.1:HCIAFFOI_03459168-293
WP_013483512.1:HCIAFFOI_0363277-203
WP_013483553.1:HCIAFFOI_03677176-288
WP_013483654.1:HCIAFFOI_0378018-52
104-212
256-305
WP_013483748.1:HCIAFFOI_03879123-229
251-345
360-464
WP_013483917.1:HCIAFFOI_04072926-1037
1057-1186
WP_013497055.1:HCIAFFOI_00315114-233
281-388
403-486
518-564
575-647
657-725
729-831
839-882
935-986
WP_013497072.1:HCIAFFOI_0033280-193
208-301
403-526
WP_013497319.1:HCIAFFOI_00601187-317
WP_013497458.1:HCIAFFOI_00764206-298
WP_013497467.1:HCIAFFOI_0077416-96
WP_013497469.1:HCIAFFOI_0077781-210
WP_013497495.1:HCIAFFOI_00810191-321
421-547
WP_013497527.1:HCIAFFOI_0084982-187
211-300
WP_013497602.1:HCIAFFOI_00934150-277
WP_013497643.1:HCIAFFOI_0097879-214
WP_013497726.1:HCIAFFOI_0106284-189
WP_013497816.1:HCIAFFOI_0115518-52
105-212
256-304
WP_013497850.1:HCIAFFOI_0119793-196
210-238
WP_013498126.1:HCIAFFOI_01502175-279
332-446
WP_013498185.1:HCIAFFOI_0157317-108
WP_013498417.1:HCIAFFOI_01815107-191
WP_013498844.1:HCIAFFOI_0226875-197
WP_013498856.1:HCIAFFOI_02280112-175
WP_013499069.1:HCIAFFOI_02524149-275
WP_013499070.1:HCIAFFOI_02525122-251
WP_013499329.1:HCIAFFOI_0283176-186
200-302
WP_013499359.1:HCIAFFOI_02861124-219
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111471:GJLLLGJL_0144167-183
207-319
Syntrophomonas erecta, DSM 16215 OINOEOOJ_019721470-1570
FD_MS_7_1, AnGL28 AnGL28_0130953-161
319-421
FD_SO4_25_1_F22, AnGL30 AnGL30_02222318-409
415-503
FD_SO4_37_1, AnGL2 AnGL2_0043953-161
319-421
FD_YE_37_3, AnGL26 AnGL26_00444542-628
641-731
742-836
AnGL26_0048338-125
193-308
371-415
471-583
705-828
968-1054
AnGL26_0087575-183
265-375
AnGL26_008991916-2019
Syntrophomonas curvata, Scurva Scurva_0060974-201
219-289
306-421
Syntrophomonas erecta sporosyntropha, Sespor Sespor_016581470-1570
Terrisporobacter hibernicus, AnGL54 AnGL54_045321245-1377
1525-1657
AnGL54_0123451-93
122-191
AnGL54_0187938-143
Sunxiuqinia elliptica, AnGL22 AnGL22_00445542-628
641-731
742-836
AnGL22_0048438-125
193-308
371-415
471-583
705-828
968-1054
AnGL22_0087675-183
265-375
AnGL22_009001916-2019
Syntrophomonas erecta, GB-438 Ga0610585_019721470-1570
Dietzia cinnamea, 55 PaGL#56_025794-90
PaGL#56_0258589-210
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_013621245-1377
1525-1657
AnGL54_0196251-93
122-191
AnGL54_0268338-143
Niallia taxi, AG-1 PaGL#37_05747151-263
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_11875:Spalm_02384374-496
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111471:Swol_0144167-183
207-319
Syntrophomonas zehnderi, OL-4 Szehn Szehn_00582215-343
Ruminococcus callidus, ATCC 27760 Rcal_0039474-167
181-257
Rcal_00399156-285
294-397
424-538
Rcal_0041298-187
Rcal_0059175-129
214-326
Rcal_0059280-137
160-277
290-390
489-600
Rcal_00617407-495
Rcal_00618138-246
323-451
483-562
Rcal_0066781-167
270-349
Rcal_0115576-118
155-205
Rcal_0146085-206
358-463
479-593
655-707
729-797
821-884
Rcal_0147092-208
294-378
428-550
672-765
818-910
Rcal_0147182-204
320-398
471-596
623-735
Rcal_01501252-299
310-416
Rcal_01660245-297
304-409
Rcal_01704278-343
375-424
Rcal_01802256-301
309-412
Rcal_01820245-297
304-409
Rcal_0193157-160
237-366
Rcal_01968100-229
Rcal_0197095-224
304-403
405-461
Rcal_0197221-137
162-286
295-387
Rcal_02160159-278
364-414
414-495
589-691
722-786
Rcal_0232822-104
Rcal_0234787-157
193-292
351-462
Rcal_02577102-209
233-332
Rcal_02578174-300
326-440
Rcal_02653152-281
Rcal_0265478-206
307-434
Rcal_0270194-197
224-290
319-417
Rcal_0270381-161
169-288
Rcal_02735129-208
Rcal_0274783-208
237-312
334-459
Rcal_02759130-229
Rcal_0276384-190
273-391
Rcal_0276487-184
276-363
Rcal_0276590-138
165-275

PF09479:Flg_new. Listeria-Bacteroides repeat domain (List_Bact_rpt)

Found 60 similar signatures
Acetivibrio alkalicellulosi, DSM 17461 2510061544:NJMEOJLD_01764672-746
2510062183:NJMEOJLD_02384797-840
Ruminococcus albus_7, DSM 20455 WP_013483610.1:HCIAFFOI_03734504-570
576-638
649-712
721-791
796-868
873-934
955-1015
1041-1114
1120-1175
1202-1264
1288-1361
1440-1507
1515-1582
1588-1670
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00311961-1031
Paenibacillus guangzhouensis, KCTC 33171 WP_152392936.1:KDFAKKPF_01501310-385
WP_193726518.1:KDFAKKPF_03394171-237
385-451
459-525
533-599
WP_193726545.1:KDFAKKPF_03832568-622
1010-1086
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698578.1:PROKKA_02379368-433
764-829
836-903
910-976
983-1049
1313-1378
WP_171003513.1:PROKKA_02715669-733
743-810
820-887
898-964
975-1041
1052-1117
1127-1193
FD_YE_37_3, AnGL26 AnGL26_008991791-1860
2083-2161
2406-2454
FD_YE_37_8_2, AnGL3 AnGL3_02883996-1059
2135-2182
2199-2264
Syntrophomonas curvata, Scurva Scurva_01501482-548
Syntrophomonas wolfei methylbutyratica, Swm Swm_00355957-1027
Sunxiuqinia elliptica, AnGL22 AnGL22_009001791-1860
2083-2161
2406-2454
Dietzia cinnamea, 55 PaGL#56_0258048-113
PaGL#56_02585357-422
Syntrophomonas palmitatica, JCM14374 Spalm Ga0128340_1031:Spalm_00529773-847
851-927
931-1007
1011-1087
1091-1166
Spalm_022483-38
1322-1389
Ga0128340_11875:Spalm_023841007-1083
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00311961-1031
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_13310:Szehn_020391601-1650
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