SMPP Home

Rcal_01224 Locus tags: • Sequence Length: 672

Ruminococcus callidus, ATCC 27760 Batch5_genome_fasta/bc2083

5050100100150150200200250250300300350350400400450450500500550550600600650650700700
Show complete sequence
Click domain (colored bar) to show sequence
Rcal_01219 Rcal_01220 Rcal_01222 Rcal_01223 Rcal_01224 Rcal_01225 Rcal_01227 Rcal_01228 
    [SP]_[PF01473]_[PF19127]_[PF01473]_[PF19127]_[PF19127]_[PF19127]_[PF13529]_[TM]

    [SP]_[92:PF01473]_[181:PF19127]_[284:PF01473]_[303:PF19127]_[344:PF19127]_[385:PF19127]_[446:PF13529]_[TM]

    [SP]_[92:IPR018337]_[181:IPR018337]_[284:IPR018337]_[303:IPR018337]_[303:IPR018337]_[344:IPR018337]_[385:IPR018337]_[446:IPR039564]_[TM]

Looking for similar signatures in the working genomes

PF01473:Choline_bind_1. Putative cell wall binding repeat

Found 95 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010964394.1:FHOCHPCF_01135479-496
558-576
606-623
627-642
705-724
805-823
825-843
935-950
952-970
972-991
1050-1069
1070-1088
1090-1108
1528-1547
1552-1567
1628-1642
1645-1660
1806-1825
1826-1841
1866-1884
1990-2003
2152-2166
2187-2201
2288-2306
2308-2326
2328-2347
2348-2367
2370-2385
2509-2528
2593-2609
2610-2629
2630-2649
2711-2730
Ruminococcus albus_7, DSM 20455 WP_154662762.1:HCIAFFOI_0176195-112
252-271
332-349
492-509
556-570
634-651
712-727
Clostridium acetobutylicum, ATCC 824 WP_010964394.1:OJAMHIDJ_01138479-496
558-576
606-623
627-642
705-724
805-823
825-843
935-950
952-970
972-991
1050-1069
1070-1088
1090-1108
1528-1547
1552-1567
1628-1642
1645-1660
1806-1825
1826-1841
1866-1884
1990-2003
2152-2166
2187-2201
2288-2306
2308-2326
2328-2347
2348-2367
2370-2385
2509-2528
2593-2609
2610-2629
2630-2649
2711-2730
Terrisporobacter hibernicus, AnGL54 AnGL54_04367281-297
298-315
AnGL54_00923319-334
AnGL54_01408150-169
192-211
297-312
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_01196281-297
298-315
AnGL54_01652319-334
AnGL54_02135150-169
192-211
297-312
Ruminococcus callidus, ATCC 27760 Rcal_00548175-190
236-254
Rcal_0122492-106
284-303
Rcal_02476229-245
252-267
273-288
289-308
Rcal_02746165-181
189-205

PF19127:Choline_bind_3. Choline-binding repeat

Found 71 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010964394.1:FHOCHPCF_01135277-318
336-376
396-421
517-554
665-702
764-799
844-884
1179-1220
1297-1339
1376-1416
1467-1507
1584-1624
2023-2056
2106-2142
2207-2248
2389-2429
2468-2505
2548-2591
2669-2707
2751-2787
Ruminococcus albus_7, DSM 20455 WP_154662762.1:HCIAFFOI_01761171-212
271-307
572-615
Clostridium acetobutylicum, ATCC 824 WP_010964394.1:OJAMHIDJ_01138277-318
336-376
396-421
517-554
665-702
764-799
844-884
1179-1220
1297-1339
1376-1416
1467-1507
1584-1624
2023-2056
2106-2142
2207-2248
2389-2429
2468-2505
2548-2591
2669-2707
2751-2787
Terrisporobacter hibernicus, AnGL54 AnGL54_04367192-230
233-277
322-366
AnGL54_0092366-106
AnGL54_0140866-108
212-256
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_01196192-230
233-277
322-366
AnGL54_0165266-106
AnGL54_0213566-108
212-256
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_1096:Szehn_005771903-1938
1942-1987
Szehn_005821468-1505
1519-1556
Ruminococcus callidus, ATCC 27760 Rcal_00338411-451
Rcal_0054871-114
195-234
254-298
Rcal_01224181-219
303-340
344-385
385-423
Rcal_0247690-119
125-165
309-345
Rcal_0274661-103

PF01473:Choline_bind_1. Putative cell wall binding repeat

Found 95 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010964394.1:FHOCHPCF_01135479-496
558-576
606-623
627-642
705-724
805-823
825-843
935-950
952-970
972-991
1050-1069
1070-1088
1090-1108
1528-1547
1552-1567
1628-1642
1645-1660
1806-1825
1826-1841
1866-1884
1990-2003
2152-2166
2187-2201
2288-2306
2308-2326
2328-2347
2348-2367
2370-2385
2509-2528
2593-2609
2610-2629
2630-2649
2711-2730
Ruminococcus albus_7, DSM 20455 WP_154662762.1:HCIAFFOI_0176195-112
252-271
332-349
492-509
556-570
634-651
712-727
Clostridium acetobutylicum, ATCC 824 WP_010964394.1:OJAMHIDJ_01138479-496
558-576
606-623
627-642
705-724
805-823
825-843
935-950
952-970
972-991
1050-1069
1070-1088
1090-1108
1528-1547
1552-1567
1628-1642
1645-1660
1806-1825
1826-1841
1866-1884
1990-2003
2152-2166
2187-2201
2288-2306
2308-2326
2328-2347
2348-2367
2370-2385
2509-2528
2593-2609
2610-2629
2630-2649
2711-2730
Terrisporobacter hibernicus, AnGL54 AnGL54_04367281-297
298-315
AnGL54_00923319-334
AnGL54_01408150-169
192-211
297-312
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_01196281-297
298-315
AnGL54_01652319-334
AnGL54_02135150-169
192-211
297-312
Ruminococcus callidus, ATCC 27760 Rcal_00548175-190
236-254
Rcal_0122492-106
284-303
Rcal_02476229-245
252-267
273-288
289-308
Rcal_02746165-181
189-205

PF19127:Choline_bind_3. Choline-binding repeat

Found 71 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010964394.1:FHOCHPCF_01135277-318
336-376
396-421
517-554
665-702
764-799
844-884
1179-1220
1297-1339
1376-1416
1467-1507
1584-1624
2023-2056
2106-2142
2207-2248
2389-2429
2468-2505
2548-2591
2669-2707
2751-2787
Ruminococcus albus_7, DSM 20455 WP_154662762.1:HCIAFFOI_01761171-212
271-307
572-615
Clostridium acetobutylicum, ATCC 824 WP_010964394.1:OJAMHIDJ_01138277-318
336-376
396-421
517-554
665-702
764-799
844-884
1179-1220
1297-1339
1376-1416
1467-1507
1584-1624
2023-2056
2106-2142
2207-2248
2389-2429
2468-2505
2548-2591
2669-2707
2751-2787
Terrisporobacter hibernicus, AnGL54 AnGL54_04367192-230
233-277
322-366
AnGL54_0092366-106
AnGL54_0140866-108
212-256
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_01196192-230
233-277
322-366
AnGL54_0165266-106
AnGL54_0213566-108
212-256
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_1096:Szehn_005771903-1938
1942-1987
Szehn_005821468-1505
1519-1556
Ruminococcus callidus, ATCC 27760 Rcal_00338411-451
Rcal_0054871-114
195-234
254-298
Rcal_01224181-219
303-340
344-385
385-423
Rcal_0247690-119
125-165
309-345
Rcal_0274661-103

PF19127:Choline_bind_3. Choline-binding repeat

Found 71 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010964394.1:FHOCHPCF_01135277-318
336-376
396-421
517-554
665-702
764-799
844-884
1179-1220
1297-1339
1376-1416
1467-1507
1584-1624
2023-2056
2106-2142
2207-2248
2389-2429
2468-2505
2548-2591
2669-2707
2751-2787
Ruminococcus albus_7, DSM 20455 WP_154662762.1:HCIAFFOI_01761171-212
271-307
572-615
Clostridium acetobutylicum, ATCC 824 WP_010964394.1:OJAMHIDJ_01138277-318
336-376
396-421
517-554
665-702
764-799
844-884
1179-1220
1297-1339
1376-1416
1467-1507
1584-1624
2023-2056
2106-2142
2207-2248
2389-2429
2468-2505
2548-2591
2669-2707
2751-2787
Terrisporobacter hibernicus, AnGL54 AnGL54_04367192-230
233-277
322-366
AnGL54_0092366-106
AnGL54_0140866-108
212-256
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_01196192-230
233-277
322-366
AnGL54_0165266-106
AnGL54_0213566-108
212-256
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_1096:Szehn_005771903-1938
1942-1987
Szehn_005821468-1505
1519-1556
Ruminococcus callidus, ATCC 27760 Rcal_00338411-451
Rcal_0054871-114
195-234
254-298
Rcal_01224181-219
303-340
344-385
385-423
Rcal_0247690-119
125-165
309-345
Rcal_0274661-103

PF19127:Choline_bind_3. Choline-binding repeat

Found 71 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010964394.1:FHOCHPCF_01135277-318
336-376
396-421
517-554
665-702
764-799
844-884
1179-1220
1297-1339
1376-1416
1467-1507
1584-1624
2023-2056
2106-2142
2207-2248
2389-2429
2468-2505
2548-2591
2669-2707
2751-2787
Ruminococcus albus_7, DSM 20455 WP_154662762.1:HCIAFFOI_01761171-212
271-307
572-615
Clostridium acetobutylicum, ATCC 824 WP_010964394.1:OJAMHIDJ_01138277-318
336-376
396-421
517-554
665-702
764-799
844-884
1179-1220
1297-1339
1376-1416
1467-1507
1584-1624
2023-2056
2106-2142
2207-2248
2389-2429
2468-2505
2548-2591
2669-2707
2751-2787
Terrisporobacter hibernicus, AnGL54 AnGL54_04367192-230
233-277
322-366
AnGL54_0092366-106
AnGL54_0140866-108
212-256
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_01196192-230
233-277
322-366
AnGL54_0165266-106
AnGL54_0213566-108
212-256
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_1096:Szehn_005771903-1938
1942-1987
Szehn_005821468-1505
1519-1556
Ruminococcus callidus, ATCC 27760 Rcal_00338411-451
Rcal_0054871-114
195-234
254-298
Rcal_01224181-219
303-340
344-385
385-423
Rcal_0247690-119
125-165
309-345
Rcal_0274661-103

PF13529:Peptidase_C39_2. Peptidase_C39 like family

Found 41 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_013913694.1:FHOCHPCF_03983202-332
FHOCHPCF_02087334-481
Acetivibrio alkalicellulosi, DSM 17461 2510059967:NJMEOJLD_00228106-242
2510060517:NJMEOJLD_0076455-186
2510062369:NJMEOJLD_0256960-182
Pseudobacteroides cellulosolvens, DSM 2933 WP_028308403.1:NEIHKHHH_03050109-243
WP_036935472.1:NEIHKHHH_04833109-243
Clostridium acetobutylicum, ATCC 824 OJAMHIDJ_02095334-481
FD_YE_37_9_2, AnGL4 AnGL4_01034685-851
Syntrophus buswellii, Sbus Sbus_0131815-122
Paraclostridium benzoelyticum, AnGL27 AnGL27_01148136-270
FD-YE-37-9-3, AnGL29 AnGL29_01759685-851
Exiguobacterium mexicanum, AnGL24 AnGL24_0012744-168
Clostridium subterminale, CB-LS10-1 AnGL53_0319039-204
AnGL53_03191118-283
AnGL53_0324778-244
Priestia megaterium, 10L1 PaGL#57_05979315-421
Methanospirillum lacunae, Ki8-1 MLKi8_0034025-158
MLKi8_0325276-198
Fictibacillus phosphorivorans, TY7 PaGL#38_0422352-218
Bacillus subtilis, 30VD-1 PaGL#66_0080561-222
Micromonospora inositola, Utrum1 PaGL#61_00542234-387
PaGL#61_00543227-380
PaGL#61_0074757-191
PaGL#61_01901216-368
PaGL#61_0204892-225
PaGL#61_02206114-252
PaGL#61_028463-139
PaGL#61_0512852-190
PaGL#61_0519753-191
PaGL#61_0570652-190
Niallia taxi, AG-1 PaGL#37_05904104-269
PaGL#37_05657104-270
PaGL#37_00577108-269
PaGL#37_0125249-213
PaGL#37_0312291-255
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_1529:Szehn_02672136-271
Syntrophus aciditrophicus, SB 637861461:SYN_0291526-136
Ruminococcus callidus, ATCC 27760 Rcal_00338462-596
Rcal_01224446-612
Rcal_0284778-240
Search by locus tag: Search
↑ Top




v4.1 @copyright 2025 UCLA