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Swm_03006 Locus tags: • Sequence Length: 1418

Syntrophomonas wolfei methylbutyratica, Swm Batch1_genome_fasta/SM1

505010010015015020020025025030030035035040040045045050050055055060060065065070070075075080080085085090090095095010001000105010501100110011501150120012001250125013001300135013501400140014501450
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Swm_03003 Swm_03005 Swm_03006 Swm_03007 Swm_03009 Swm_03010 
    [SP]_[PF13620]_[PF01436]_[PF12799]_[PF12799]_[PF19078]_[TM]

    [SP]_[37:PF13620]_[473:PF01436]_[751:PF12799]_[901:PF12799]_[986:PF19078]_[TM]

    [SP]_[138:IPR008969]_[236:IPR003961]_[243:IPR036116]_[250:IPR003961]_[408:IPR001258]_[473:IPR001258]_[473:IPR001258]_[528:IPR001258]_[727:IPR003591]_[729:IPR001611]_[749:IPR003591]_[751:IPR025875]_[751:IPR001611]_[771:IPR003591]_[773:IPR001611]_[855:IPR003591]_[857:IPR001611]_[879:IPR001611]_[899:IPR003591]_[901:IPR025875]_[901:IPR001611]_[943:IPR003591]_[945:IPR001611]_[986:IPR032812]_[TM]

Looking for similar signatures in the working genomes

PF13620:CarboxypepD_reg. Carboxypeptidase regulatory-like domain

Found 81 similar signatures
Clostridium acetobutylicum, DSM 1731 WP_010964395.1:FHOCHPCF_01136894-985
990-1073
WP_010964396.1:FHOCHPCF_011371581-1670
Acetivibrio alkalicellulosi, DSM 17461 2510061487:NJMEOJLD_01711687-736
Pseudobacteroides cellulosolvens, DSM 2933 WP_036940937.1:NEIHKHHH_0085657-110
NEIHKHHH_0120736-106
WP_081926943.1:NEIHKHHH_01509527-588
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_112672:GJLLLGJL_0262437-134
Paenibacillus guangzhouensis, KCTC 33171 WP_152394206.1:KDFAKKPF_029651639-1695
Clostridium acetobutylicum, ATCC 824 WP_010964395.1:OJAMHIDJ_01139894-985
990-1073
WP_010964396.1:OJAMHIDJ_011401581-1670
FD_MS_7_1, AnGL28 AnGL28_0224244-121
FD_SO4_25_1_F22, AnGL30 AnGL30_0097224-99
FD_SO4_37_1, AnGL2 AnGL2_0137144-121
FD_YE_37_3, AnGL26 AnGL26_00881503-560
675-744
AnGL26_0118631-109
AnGL26_0167234-109
AnGL26_03078206-293
AnGL26_0410226-98
FD_YE_37_8_2, AnGL3 AnGL3_0283123-106
FD_YE_37_9_2, AnGL4 AnGL4_02088940-1022
1099-1177
Syntrophomonas wolfei methylbutyratica, Swm Swm_0300637-133
Sunxiuqinia elliptica, AnGL22 AnGL22_00882503-560
675-744
AnGL22_0118831-109
AnGL22_0166934-109
AnGL22_03074206-293
AnGL22_0409826-98
FD-MS-7-8, AnGL9 AnGL9_0238729-106
FD-YE-37-9-3, AnGL29 AnGL29_02813940-1022
1099-1177
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0037425-96
PaGL#35_0058833-109
PaGL#35_0132832-108
PaGL#35_0143328-104
PaGL#35_0169128-108
PaGL#35_0217022-100
PaGL#35_0223928-106
PaGL#35_0241030-112
PaGL#35_03297155-231
PaGL#35_033607-83
PaGL#35_0416228-105
PaGL#35_0437725-104
PaGL#35_0527939-116
Geodermatophilus sp., RDM14 PaGL#36_0200964-151
Fictibacillus phosphorivorans, TY7 PaGL#38_01114690-769
PaGL#38_01255921-1000
Micromonospora inositola, Utrum1 PaGL#61_00418148-231
PaGL#61_01333494-569
576-643
850-926
1705-1785
PaGL#61_02054137-220
PaGL#61_02501502-581
589-663
860-939
PaGL#61_02635440-518
Sphingomonas sp., CR2A3 PaGL#62_01972118-196
PaGL#62_0324045-107
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_01946468-539
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_112672:Swol_0262437-134
Mucilaginibacter gossypii, cycad 4 PaGL#42_0048927-97
PaGL#42_0067930-111
PaGL#42_0071049-126
PaGL#42_0097125-98
PaGL#42_0110227-109
PaGL#42_0138814-92
PaGL#42_0147428-101
PaGL#42_0154124-87
PaGL#42_0264125-94
PaGL#42_0331428-109
PaGL#42_0384428-110
PaGL#42_0447728-110
PaGL#42_0453324-94
PaGL#42_0519932-106
PaGL#42_0540625-86
PaGL#42_0555724-100
PaGL#42_0572928-109

PF01436:NHL. NHL repeat

Found 78 similar signatures
Acetivibrio alkalicellulosi, DSM 17461 2510063375:NJMEOJLD_0355860-88
109-135
Pseudobacteroides cellulosolvens, DSM 2933 WP_050753953.1:NEIHKHHH_05803668-695
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111470:GJLLLGJL_01440537-564
655-682
711-737
775-802
Ga0065332_112672:GJLLLGJL_02624473-500
Paenibacillus guangzhouensis, KCTC 33171 WP_152392384.1:KDFAKKPF_0087561-88
110-137
WP_152395209.1:KDFAKKPF_04137118-144
WP_152395965.1:KDFAKKPF_0507956-83
107-134
155-182
205-232
254-281
306-332
356-383
404-431
446-468
507-533
560-587
611-638
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137697749.1:PROKKA_00485268-294
321-347
377-404
440-466
Syntrophomonas wolfei methylbutyratica, Swm Swm_03006473-500
Methylobacterium radiotolerans, GTSA1 PaGL#34_06411168-197
PaGL#34_0298399-125
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0011069-91
PaGL#35_0052976-103
PaGL#35_01105163-190
271-298
426-453
PaGL#35_0552686-110
Methanospirillum lacunae, Ki8-1 MLKi8_0171045-73
96-120
141-167
186-213
277-305
Fictibacillus phosphorivorans, TY7 PaGL#38_04294311-339
Methanospirillum hungatei, GP1 MhGP1_0030718-39
Methanospirillum stamsii, Pt1 MLKi8_02618200-227
246-274
293-321
434-462
573-601
620-648
MLKi8_03288594-622
Micromonospora inositola, Utrum1 PaGL#61_00340402-430
Methanospirillum.hungatei GP1, MhGP1 8064049282:MhGP1_0259518-39
MPOB, Sfum Sfum_0221958-85
115-142
171-197
340-364
395-421
506-533
562-588
639704834:Sfum_04158472-498
527-554
600-626
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111470:Swol_01440537-564
655-682
711-737
775-802
Ga0065332_112672:Swol_02624473-500
Mucilaginibacter gossypii, cycad 4 PaGL#42_0132669-97
PaGL#42_01911161-183
413-440
PaGL#42_02223161-188
PaGL#42_04354163-189
217-244
271-298
326-353
425-452
PaGL#42_05708186-213
240-267

PF12799:LRR_4. Leucine Rich repeats (2 copies)

Found 79 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517726.1:LOMAGDGF_02359154-193
198-239
Clostridium acetobutylicum, DSM 1731 WP_010966548.1:FHOCHPCF_03327663-705
795-837
WP_010966549.1:FHOCHPCF_03328940-981
WP_013913677.1:FHOCHPCF_03332532-574
620-661
664-706
WP_010966554.1:FHOCHPCF_03333554-596
619-662
754-792
Acetivibrio alkalicellulosi, DSM 17461 2510060638:NJMEOJLD_00882133-174
199-242
244-285
287-330
429-466
472-513
615-658
2510060640:NJMEOJLD_00884133-174
176-219
242-283
2510062060:NJMEOJLD_02268313-351
2510062629:NJMEOJLD_02828156-198
222-265
267-309
310-345
453-496
522-559
690-732
735-769
854-897
988-1029
1175-1217
2510062899:NJMEOJLD_03084112-152
157-198
355-398
402-443
445-485
2510063234:NJMEOJLD_03420312-353
356-396
2510063852:NJMEOJLD_04027230-273
274-318
2510063874:NJMEOJLD_04049330-373
374-423
2510064108:NJMEOJLD_04277176-217
262-302
Pseudobacteroides cellulosolvens, DSM 2933 WP_050753315.1:NEIHKHHH_01947118-160
162-199
489-530
WP_050753434.1:NEIHKHHH_02779278-318
WP_036945214.1:NEIHKHHH_0547391-132
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111471:GJLLLGJL_01441555-596
600-641
Ga0065332_112672:GJLLLGJL_02624728-770
773-805
901-938
Paenibacillus guangzhouensis, KCTC 33171 WP_193726563.1:KDFAKKPF_04097191-227
Clostridium acetobutylicum, ATCC 824 WP_010966548.1:OJAMHIDJ_03337663-705
795-837
WP_010966549.1:OJAMHIDJ_03338940-981
WP_010966553.1:OJAMHIDJ_03342532-574
620-661
664-706
WP_010966554.1:OJAMHIDJ_03343554-596
619-662
754-792
Syntrophomonas wolfei methylbutyratica, Swm Swm_03006751-793
901-938
Terrisporobacter hibernicus, AnGL54 AnGL54_02268377-418
Paraclostridium benzoelyticum, AnGL27 AnGL27_00329112-154
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00974279-318
Methylorubrum populi, CTY4 PaGL#39_0278642-79
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_03071377-418
MPOB, Sfum 639703821:Sfum_03088612-654
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111471:Swol_01441555-596
600-641
Ga0065332_112672:Swol_02624728-770
773-805
901-938

PF12799:LRR_4. Leucine Rich repeats (2 copies)

Found 79 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003517726.1:LOMAGDGF_02359154-193
198-239
Clostridium acetobutylicum, DSM 1731 WP_010966548.1:FHOCHPCF_03327663-705
795-837
WP_010966549.1:FHOCHPCF_03328940-981
WP_013913677.1:FHOCHPCF_03332532-574
620-661
664-706
WP_010966554.1:FHOCHPCF_03333554-596
619-662
754-792
Acetivibrio alkalicellulosi, DSM 17461 2510060638:NJMEOJLD_00882133-174
199-242
244-285
287-330
429-466
472-513
615-658
2510060640:NJMEOJLD_00884133-174
176-219
242-283
2510062060:NJMEOJLD_02268313-351
2510062629:NJMEOJLD_02828156-198
222-265
267-309
310-345
453-496
522-559
690-732
735-769
854-897
988-1029
1175-1217
2510062899:NJMEOJLD_03084112-152
157-198
355-398
402-443
445-485
2510063234:NJMEOJLD_03420312-353
356-396
2510063852:NJMEOJLD_04027230-273
274-318
2510063874:NJMEOJLD_04049330-373
374-423
2510064108:NJMEOJLD_04277176-217
262-302
Pseudobacteroides cellulosolvens, DSM 2933 WP_050753315.1:NEIHKHHH_01947118-160
162-199
489-530
WP_050753434.1:NEIHKHHH_02779278-318
WP_036945214.1:NEIHKHHH_0547391-132
Syntrophomonas wolfei subsp. wolfei, Goettingen Ga0065332_111471:GJLLLGJL_01441555-596
600-641
Ga0065332_112672:GJLLLGJL_02624728-770
773-805
901-938
Paenibacillus guangzhouensis, KCTC 33171 WP_193726563.1:KDFAKKPF_04097191-227
Clostridium acetobutylicum, ATCC 824 WP_010966548.1:OJAMHIDJ_03337663-705
795-837
WP_010966549.1:OJAMHIDJ_03338940-981
WP_010966553.1:OJAMHIDJ_03342532-574
620-661
664-706
WP_010966554.1:OJAMHIDJ_03343554-596
619-662
754-792
Syntrophomonas wolfei methylbutyratica, Swm Swm_03006751-793
901-938
Terrisporobacter hibernicus, AnGL54 AnGL54_02268377-418
Paraclostridium benzoelyticum, AnGL27 AnGL27_00329112-154
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_00974279-318
Methylorubrum populi, CTY4 PaGL#39_0278642-79
Terrisporobacter hibernicus, CB-LS-10-2 AnGL54_03071377-418
MPOB, Sfum 639703821:Sfum_03088612-654
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Ga0065332_111471:Swol_01441555-596
600-641
Ga0065332_112672:Swol_02624728-770
773-805
901-938

PF19078:Big_12. Bacterial Ig-like domain

Found 199 similar signatures
Acetivibrio thermocellus, DSM 1313 WP_003518117.1:LOMAGDGF_03099611-707
Clostridium acetobutylicum, DSM 1731 WP_010963725.1:FHOCHPCF_00447194-251
256-345
392-424
WP_010964438.1:FHOCHPCF_01180260-364
WP_013913561.1:FHOCHPCF_01927204-301
Acetivibrio alkalicellulosi, DSM 17461 2510060841:NJMEOJLD_01078391-476
2510061561:NJMEOJLD_01780118-216
2510062987:NJMEOJLD_031731016-1112
1134-1235
1240-1335
2613-2714
2718-2819
Pseudobacteroides cellulosolvens, DSM 2933 WP_036940672.1:NEIHKHHH_01180288-399
WP_050753343.1:NEIHKHHH_02134125-218
WP_036942091.1:NEIHKHHH_03208429-526
Syntrophomonas wolfei subsp. wolfei, Goettingen GJLLLGJL_00173637-719
GJLLLGJL_00177772-843
Ga0065332_11191:GJLLLGJL_00183146-248
GJLLLGJL_0122544-155
Ga0065332_112123:GJLLLGJL_02078124-210
Ga0065332_112637:GJLLLGJL_0258910-102
GJLLLGJL_0261145-156
Ga0065332_112672:GJLLLGJL_02624986-1077
Paenibacillus guangzhouensis, KCTC 33171 WP_193726703.1:KDFAKKPF_00039204-294
WP_227793462.1:KDFAKKPF_01301418-521
527-629
WP_152393219.1:KDFAKKPF_01828225-327
WP_152394663.1:KDFAKKPF_03502276-369
375-467
WP_152395201.1:KDFAKKPF_041291013-1113
KDFAKKPF_0553049-160
164-275
278-387
Clostridium acetobutylicum, ATCC 824 WP_010963725.1:OJAMHIDJ_00448194-251
256-345
392-424
WP_010964438.1:OJAMHIDJ_01183260-364
WP_010965191.1:OJAMHIDJ_01935204-301
Ruminiclostridium herbifermentans MA18, DSM 109966 WP_137698636.1:PROKKA_03666553-640
WP_137698637.1:PROKKA_03667551-655
WP_190530414.1:PROKKA_03668551-656
WP_190530415.1:PROKKA_03669551-656
PROKKA_0133866-164
Syntrophomonas erecta, DSM 16215 OINOEOOJ_001179-122
OINOEOOJ_0198240-153
FD_25_27, AnGL8 AnGL8_00335440-522
677-775
887-973
1000-1094
1265-1366
1381-1482
1735-1825
1826-1929
2076-2158
2172-2284
2296-2393
2444-2532
2783-2864
2874-2975
3011-3111
3261-3360
3714-3779
4002-4084
4096-4203
4227-4325
4835-4938
5102-5194
5351-5445
5458-5562
5604-5701
5847-5953
5958-6068
6104-6186
6460-6551
6850-6949
6962-7070
7235-7336
7361-7453
7482-7585
7610-7712
8198-8300
8567-8641
10035-10118
FD_SO4_25_1_F22, AnGL30 AnGL30_0102840-140
FD_YE_37_3, AnGL26 AnGL26_0182633-133
AnGL26_02930524-622
1027-1115
1639-1749
2257-2376
2379-2494
FD_YE_37_8_2, AnGL3 AnGL3_00847740-835
AnGL3_0177727-120
AnGL3_0177929-123
127-221
AnGL3_0247339-139
AnGL3_02883488-583
AnGL3_0329027-142
148-251
372-471
FD_YE_37_9_2, AnGL4 AnGL4_01067430-536
547-642
Syntrophomonas curvata, Scurva Scurva_01526397-504
Scurva_019161609-1711
1711-1812
Scurva_029418-118
Syntrophomonas erecta sporosyntropha, Sespor Sespor_008899-122
Sespor_0159040-153
Sespor_01615191-292
Syntrophomonas wolfei methylbutyratica, Swm Swm_00144394-496
Swm_00166146-248
Swm_00284192-292
Swm_02387123-209
Swm_029816-119
Swm_0300445-156
Swm_03006986-1077
Sunxiuqinia elliptica, AnGL22 AnGL22_0182333-133
AnGL22_02927524-622
1027-1115
1639-1749
2257-2376
2379-2494
FD-MS-7-8, AnGL9 AnGL9_02203725-800
AnGL9_02488186-260
279-351
AnGL9_02636594-667
FD-YE-37-9-3, AnGL29 AnGL29_01792430-536
547-642
Mucilaginibacter sabulilitoris, SNA2 PaGL#35_0040937-136
PaGL#35_04941346-462
PaGL#35_04942689-805
Syntrophomonas erecta, GB-438 Ga0610585_001179-122
Ga0610585_0198240-153
Variovorax sp., EBFNA2 PaGL#33_00413436-541
PaGL#33_02482207-295
318-403
429-507
520-617
630-721
740-825
PaGL#33_02748405-518
PaGL#33_0416139-128
147-241
265-341
368-441
PaGL#33_0416246-128
145-233
265-344
353-449
854-949
967-1050
PaGL#33_05145443-547
Variovorax paradoxus, 2u118 PaGL#32_00406436-541
Maridesulfovibrio salexigens, AnGL23 AnGL23_00998205-306
325-410
429-534
1149-1244
1274-1361
1902-1985
1997-2084
Exiguobacterium mexicanum, AnGL24 AnGL24_00036245-344
Clostridium subterminale, CB-LS10-1 AnGL53_00011126-219
221-318
320-416
Priestia megaterium, 10L1 PaGL#57_0472050-153
Variovorax paradoxus, SPNA7 PaGL#43_00379436-541
Geodermatophilus sp., RDM14 PaGL#36_02881709-816
818-922
PaGL#36_034441572-1681
1687-1792
1794-1897
Fictibacillus phosphorivorans, TY7 PaGL#38_0465349-133
Syntrophomonas wolfei, saponavida Swsap_0139942-154
Swsap_01977246-355
Swsap_031211067-1168
Swsap_0320445-144
Swsap_0323570-169
Swsap_0323870-169
Niallia taxi, AG-1 PaGL#37_033511263-1372
Syntrophomonas palmitatica, JCM14374 Spalm Spalm_00554485-596
Spalm_0113259-161
168-266
272-371
382-476
479-582
Syntrophomonas wolfei (Swol), Goettingen.DSM2245B Swol_00173637-719
Swol_00177772-843
Ga0065332_11191:Swol_00183146-248
Swol_0122544-155
Ga0065332_112123:Swol_02078124-210
Ga0065332_112637:Swol_0258910-102
Swol_0261145-156
Ga0065332_112672:Swol_02624986-1077
Syntrophomonas zehnderi, OL-4 Szehn Ga0124040_1096:Szehn_005771257-1358
Szehn_00582811-906
Szehn_0110546-156
Szehn_01110967-1071
Ga0124040_12820:Szehn_01679188-292
Mucilaginibacter gossypii, cycad 4 PaGL#42_0475536-136
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