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PaGL#43_06467 Locus tags: • Sequence Length: 1404

Variovorax paradoxus, SPNA7 Batch3_genome_fasta/V.paradoxus.SPNA7

505010010015015020020025025030030035035040040045045050050055055060060065065070070075075080080085085090090095095010001000105010501100110011501150120012001250125013001300135013501400140014501450
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unknown PaGL#43_00918 PaGL#43_06466 PaGL#43_00919 PaGL#43_06467 PaGL#43_00920 PaGL#43_00921 PaGL#43_00922 PaGL#43_00923 PaGL#43_06468 
    [SP]_[PF13018]_[PF12951]_[PF12951]_[PF12951]_[PF18883]_[PF03797]_[TM]

    [SP]_[0:PF13018]_[491:PF12951]_[722:PF12951]_[812:PF12951]_[869:PF18883]_[1065:PF03797]_[TM]

    [SP]_[0:IPR024973]_[468:IPR011050]_[491:IPR013425]_[722:IPR013425]_[758:IPR011050]_[804:IPR043990]_[812:IPR013425]_[869:IPR043990]_[1058:IPR005546]_[1058:IPR036709]_[1062:IPR005546]_[1065:IPR005546]_[TM]

Looking for similar signatures in the working genomes

PF13018:ESPR. Extended Signal Peptide of Type V secretion system

Found 12 similar signatures
Variovorax sp., EBFNA2 PaGL#33_062820-47
PaGL#33_067680-49
PaGL#33_051620-48
Variovorax paradoxus, 2u118 PaGL#32_055060-47
PaGL#32_061530-38
PaGL#32_022640-49
PaGL#32_039510-47
Variovorax paradoxus, SPNA7 PaGL#43_002460-42
PaGL#43_060860-37
PaGL#43_064670-51
PaGL#43_064900-48
PaGL#43_039940-41

PF12951:PATR. Passenger-associated-transport-repeat

Found 66 similar signatures
FD_YE_37_8_2, AnGL3 AnGL3_02854688-718
952-980
1046-1074
1237-1267
AnGL3_02855685-715
942-972
1042-1055
1232-1261
Methylobacterium radiotolerans, GTSA1 PaGL#34_02170422-451
487-517
PaGL#34_0467765-93
352-382
Variovorax sp., EBFNA2 PaGL#33_06282386-416
563-593
868-898
1212-1242
1517-1547
1608-1637
1767-1796
2075-2102
2138-2167
2275-2303
Variovorax paradoxus, SPNA7 PaGL#43_06467491-520
722-752
812-841
Methylorubrum populi, CTY4 PaGL#39_01404697-725
785-815
891-915
1080-1108
1173-1201
1240-1273
1546-1576
1764-1794
1854-1884
Micromonospora inositola, Utrum1 PaGL#61_04656544-574
Sphingomonas sp., CR2A3 PaGL#62_00590315-335
639-659
1106-1141
1330-1360
1402-1432
1558-1588
1714-1744
1785-1812
2083-2113
2172-2202
2244-2271
2313-2337
2614-2644
2703-2731
3003-3033
3072-3101
3140-3170
3817-3847
3905-3935
3977-4003
4272-4301
4363-4391
4659-4689
PaGL#62_01175597-626
1197-1225
1271-1290
1358-1388
2775-2802
3211-3237
4145-4172
Niallia taxi, AG-1 PaGL#37_04404453-481

PF12951:PATR. Passenger-associated-transport-repeat

Found 66 similar signatures
FD_YE_37_8_2, AnGL3 AnGL3_02854688-718
952-980
1046-1074
1237-1267
AnGL3_02855685-715
942-972
1042-1055
1232-1261
Methylobacterium radiotolerans, GTSA1 PaGL#34_02170422-451
487-517
PaGL#34_0467765-93
352-382
Variovorax sp., EBFNA2 PaGL#33_06282386-416
563-593
868-898
1212-1242
1517-1547
1608-1637
1767-1796
2075-2102
2138-2167
2275-2303
Variovorax paradoxus, SPNA7 PaGL#43_06467491-520
722-752
812-841
Methylorubrum populi, CTY4 PaGL#39_01404697-725
785-815
891-915
1080-1108
1173-1201
1240-1273
1546-1576
1764-1794
1854-1884
Micromonospora inositola, Utrum1 PaGL#61_04656544-574
Sphingomonas sp., CR2A3 PaGL#62_00590315-335
639-659
1106-1141
1330-1360
1402-1432
1558-1588
1714-1744
1785-1812
2083-2113
2172-2202
2244-2271
2313-2337
2614-2644
2703-2731
3003-3033
3072-3101
3140-3170
3817-3847
3905-3935
3977-4003
4272-4301
4363-4391
4659-4689
PaGL#62_01175597-626
1197-1225
1271-1290
1358-1388
2775-2802
3211-3237
4145-4172
Niallia taxi, AG-1 PaGL#37_04404453-481

PF12951:PATR. Passenger-associated-transport-repeat

Found 66 similar signatures
FD_YE_37_8_2, AnGL3 AnGL3_02854688-718
952-980
1046-1074
1237-1267
AnGL3_02855685-715
942-972
1042-1055
1232-1261
Methylobacterium radiotolerans, GTSA1 PaGL#34_02170422-451
487-517
PaGL#34_0467765-93
352-382
Variovorax sp., EBFNA2 PaGL#33_06282386-416
563-593
868-898
1212-1242
1517-1547
1608-1637
1767-1796
2075-2102
2138-2167
2275-2303
Variovorax paradoxus, SPNA7 PaGL#43_06467491-520
722-752
812-841
Methylorubrum populi, CTY4 PaGL#39_01404697-725
785-815
891-915
1080-1108
1173-1201
1240-1273
1546-1576
1764-1794
1854-1884
Micromonospora inositola, Utrum1 PaGL#61_04656544-574
Sphingomonas sp., CR2A3 PaGL#62_00590315-335
639-659
1106-1141
1330-1360
1402-1432
1558-1588
1714-1744
1785-1812
2083-2113
2172-2202
2244-2271
2313-2337
2614-2644
2703-2731
3003-3033
3072-3101
3140-3170
3817-3847
3905-3935
3977-4003
4272-4301
4363-4391
4659-4689
PaGL#62_01175597-626
1197-1225
1271-1290
1358-1388
2775-2802
3211-3237
4145-4172
Niallia taxi, AG-1 PaGL#37_04404453-481

PF18883:AC_1. Autochaperone Domain Type 1

Found 6 similar signatures
Variovorax sp., EBFNA2 PaGL#33_062822333-2449
PaGL#33_05162544-660
Variovorax paradoxus, 2u118 PaGL#32_03951538-653
Variovorax paradoxus, SPNA7 PaGL#43_06467869-987
PaGL#43_03994538-653
Sphingomonas sp., CR2A3 PaGL#62_005904809-4911

PF03797:Autotransporter. Autotransporter beta-domain

Found 28 similar signatures
FD_MS_7_1, AnGL28 AnGL28_003881276-1535
AnGL28_02573853-1084
AnGL28_02594661-902
AnGL28_025961054-1296
AnGL28_02684871-1112
AnGL28_03027844-1081
AnGL28_03080850-1097
FD_SO4_37_1, AnGL2 AnGL2_01702853-1084
AnGL2_01723661-902
AnGL2_017251054-1296
AnGL2_01813871-1112
AnGL2_02156844-1081
AnGL2_02209850-1097
AnGL2_030671276-1535
FD-MS-7-8, AnGL9 AnGL9_00115838-1086
AnGL9_011991268-1512
AnGL9_01201662-898
AnGL9_01234932-1176
AnGL9_01304912-1155
AnGL9_02843787-1023
Methylobacterium radiotolerans, GTSA1 PaGL#34_02170773-1033
PaGL#34_04677669-925
Variovorax sp., EBFNA2 PaGL#33_05162763-1009
Variovorax paradoxus, 2u118 PaGL#32_03951788-1033
Variovorax paradoxus, SPNA7 PaGL#43_064671065-1312
PaGL#43_03994795-1040
Sphingomonas sp., CR2A3 PaGL#62_03722914-1135
Syntrophus aciditrophicus, SB 637859797:SYN_01388469-722
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